Index

A

add_background_lorentz() (pixstem.make_diffraction_test_data.DiffractionTestImage method) add_cubic_disks() (pixstem.make_diffraction_test_data.DiffractionTestImage method) add_diffraction_image() (pixstem.make_diffraction_test_data.DiffractionTestDataset method) add_disk() (pixstem.make_diffraction_test_data.DiffractionTestImage method) (pixstem.make_diffraction_test_data.MakeTestData method) add_disk_ellipse() (pixstem.make_diffraction_test_data.MakeTestData method) add_ellipse_array_as_markers() (pixstem.pixelated_stem_class.PixelatedSTEM method)

add_peak_array_as_markers() (pixstem.pixelated_stem_class.PixelatedSTEM method) add_peak_array_to_signal_as_markers() (in module pixstem.marker_tools) add_ring() (pixstem.make_diffraction_test_data.MakeTestData method) add_ring_ellipse() (pixstem.make_diffraction_test_data.MakeTestData method) angular_mask() (pixstem.pixelated_stem_class.PixelatedSTEM method) angular_slice_radial_average() (pixstem.pixelated_stem_class.PixelatedSTEM method) angular_slice_radial_integration() (pixstem.pixelated_stem_class.PixelatedSTEM method) as_lazy() (pixstem.pixelated_stem_class.PixelatedSTEM method)

B

blur() (pixstem.make_diffraction_test_data.MakeTestData method)

C

center_of_mass() (pixstem.pixelated_stem_class.PixelatedSTEM method) centre_on_image() (pixstem.make_diffraction_test_data.Circle method) Circle (class in pixstem.make_diffraction_test_data)

copy() (pixstem.make_diffraction_test_data.DiffractionTestImage method) correct_bad_pixels() (pixstem.pixelated_stem_class.PixelatedSTEM method) correct_ramp() (pixstem.pixelated_stem_class.DPCSignal2D method)

D

DiffractionTestDataset (class in pixstem.make_diffraction_test_data) DiffractionTestImage (class in pixstem.make_diffraction_test_data) Disk (class in pixstem.make_diffraction_test_data) downscale() (pixstem.make_diffraction_test_data.MakeTestData method)

downscale_factor (pixstem.make_diffraction_test_data.MakeTestData attribute) DPCBaseSignal (class in pixstem.pixelated_stem_class) DPCSignal1D (class in pixstem.pixelated_stem_class) DPCSignal2D (class in pixstem.pixelated_stem_class)

E

EllipseDisk (class in pixstem.make_diffraction_test_data)

EllipseRing (class in pixstem.make_diffraction_test_data)

F

fem_analysis() (pixstem.pixelated_stem_class.PixelatedSTEM method) fem_calc() (in module pixstem.fem_tools) find_dead_pixels() (pixstem.pixelated_stem_class.PixelatedSTEM method) find_hot_pixels() (pixstem.pixelated_stem_class.PixelatedSTEM method) find_peaks() (pixstem.pixelated_stem_class.PixelatedSTEM method)

fit_ellipses_to_signal() (in module pixstem.radial) fit_single_ellipse_to_signal() (in module pixstem.radial) flip_axis_90_degrees() (pixstem.pixelated_stem_class.DPCSignal2D method) flip_diffraction_x() (pixstem.pixelated_stem_class.PixelatedSTEM method) flip_diffraction_y() (pixstem.pixelated_stem_class.PixelatedSTEM method)

G

gaussian_blur() (pixstem.pixelated_stem_class.DPCSignal2D method) generate_4d_data() (in module pixstem.make_diffraction_test_data) generate_mesh() (pixstem.make_diffraction_test_data.MakeTestData method) get_angle_image_comparison() (in module pixstem.radial) get_bivariate_histogram() (pixstem.pixelated_stem_class.DPCSignal1D method) (pixstem.pixelated_stem_class.DPCSignal2D method) get_cbed_signal() (in module pixstem.dummy_data) get_centre_pixel() (pixstem.make_diffraction_test_data.Circle method) get_centre_position_list() (in module pixstem.radial) get_color_image_with_indicator() (pixstem.pixelated_stem_class.DPCSignal2D method) get_color_signal() (pixstem.pixelated_stem_class.DPCSignal2D method) get_coordinate_of_min() (in module pixstem.radial) get_dead_pixel_signal() (in module pixstem.dummy_data) get_diffraction_test_image() (pixstem.make_diffraction_test_data.DiffractionTestImage method) get_disk_shift_simple_test_signal() (in module pixstem.dummy_data) get_fem_signal() (in module pixstem.dummy_data) get_generic_fem_signal() (in module pixstem.dummy_data) get_holz_heterostructure_test_signal() (in module pixstem.dummy_data)

get_holz_simple_test_signal() (in module pixstem.dummy_data) get_hot_pixel_signal() (in module pixstem.dummy_data) get_magnitude_signal() (pixstem.pixelated_stem_class.DPCSignal2D method) get_nanobeam_electron_diffraction_signal() (in module pixstem.dummy_data) get_optimal_centre_position() (in module pixstem.radial) get_phase_signal() (pixstem.pixelated_stem_class.DPCSignal2D method) get_radius_vs_angle() (in module pixstem.radial) get_signal() (pixstem.make_diffraction_test_data.DiffractionTestDataset method) (pixstem.make_diffraction_test_data.DiffractionTestImage method) (pixstem.make_diffraction_test_data.Disk method) (pixstem.make_diffraction_test_data.EllipseDisk method) (pixstem.make_diffraction_test_data.EllipseRing method) (pixstem.make_diffraction_test_data.Ring method) get_simple_dpc_signal() (in module pixstem.dummy_data) get_simple_ellipse_signal_peak_array() (in module pixstem.dummy_data) get_simple_fem_signal() (in module pixstem.dummy_data) get_single_ring_diffraction_signal() (in module pixstem.dummy_data) get_square_dpc_signal() (in module pixstem.dummy_data) get_stripe_pattern_dpc_signal() (in module pixstem.dummy_data)

I

intensity_peaks() (pixstem.pixelated_stem_class.PixelatedSTEM method)

L

load_binary_merlin_signal() (in module pixstem.io_tools) load_dpc_signal() (in module pixstem.io_tools)

load_fem() (in module pixstem.fem_tools) load_ps_signal() (in module pixstem.io_tools)

M

make_signal() (pixstem.make_diffraction_test_data.MakeTestData method) MakeTestData (class in pixstem.make_diffraction_test_data)

mask_inside_r() (pixstem.make_diffraction_test_data.Ring method) mask_outside_r() (pixstem.make_diffraction_test_data.Circle method)

P

peak_position_refinement_com() (pixstem.pixelated_stem_class.PixelatedSTEM method) PixelatedSTEM (class in pixstem.pixelated_stem_class) pixstem.dummy_data (module) pixstem.fem_tools (module) pixstem.io_tools (module) pixstem.make_diffraction_test_data (module)

pixstem.marker_tools (module) pixstem.radial (module) plot() (pixstem.make_diffraction_test_data.DiffractionTestDataset method) (pixstem.make_diffraction_test_data.DiffractionTestImage method) (pixstem.pixelated_stem_class.PixelatedSTEM method) plot_fem() (in module pixstem.fem_tools)

R

radial_average() (pixstem.pixelated_stem_class.PixelatedSTEM method) radial_integration() (pixstem.pixelated_stem_class.PixelatedSTEM method) refine_signal_centre_position() (in module pixstem.radial)

Ring (class in pixstem.make_diffraction_test_data) rotate_beam_shifts() (pixstem.pixelated_stem_class.DPCSignal2D method) rotate_data() (pixstem.pixelated_stem_class.DPCSignal2D method) rotate_diffraction() (pixstem.pixelated_stem_class.PixelatedSTEM method)

S

save_fem() (in module pixstem.fem_tools) set_centre_intensity() (pixstem.make_diffraction_test_data.Disk method) set_downscale_factor() (pixstem.make_diffraction_test_data.MakeTestData method) set_signal_zero() (pixstem.make_diffraction_test_data.MakeTestData method)

set_uniform_intensity() (pixstem.make_diffraction_test_data.Circle method) shift_diffraction() (pixstem.pixelated_stem_class.PixelatedSTEM method) signal (pixstem.make_diffraction_test_data.MakeTestData attribute) signal_to_pixelated_stem() (in module pixstem.io_tools) subtract_diffraction_background() (pixstem.pixelated_stem_class.PixelatedSTEM method)

T

template_match_disk() (pixstem.pixelated_stem_class.PixelatedSTEM method) template_match_ring() (pixstem.pixelated_stem_class.PixelatedSTEM method)

template_match_with_binary_image() (pixstem.pixelated_stem_class.PixelatedSTEM method) threshold_and_mask() (pixstem.pixelated_stem_class.PixelatedSTEM method) to_signal() (pixstem.make_diffraction_test_data.MakeTestData method)

U

update_axis() (pixstem.make_diffraction_test_data.Circle method) (pixstem.make_diffraction_test_data.Disk method) (pixstem.make_diffraction_test_data.Ring method)

update_signal() (pixstem.make_diffraction_test_data.MakeTestData method)

V

virtual_annular_dark_field() (pixstem.pixelated_stem_class.PixelatedSTEM method)

virtual_bright_field() (pixstem.pixelated_stem_class.PixelatedSTEM method)

Z

z_list (pixstem.make_diffraction_test_data.MakeTestData attribute)